Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6043

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14410 and 14411 are separated by 192 nucleotides14411 and 14412 are separated by 462 nucleotides mRNA_6042: 14410 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 1,506,787 to 1,508,526 14410 mRNA_6043: 14411 - Hypothetical Protein, at 1,508,719 to 1,509,973 14411 mRNA_6044: 14412 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 1,510,436 to 1,511,474 14412

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,507,983 + 14410 mRNA_6042 0.69 -0.2
1,508,391 - -0.2
1,508,392 + +0.9
1,508,537 - +0.5
1,508,930 + 14411 mRNA_6043 0.17 -1.3
1,508,970 - 14411 mRNA_6043 0.20 -0.9
1,508,989 + 14411 mRNA_6043 0.22 +2.6
1,509,352 + 14411 mRNA_6043 0.50 -0.1
1,509,388 + 14411 mRNA_6043 0.53 +1.8
1,509,556 + 14411 mRNA_6043 0.67 +1.1
1,509,575 + 14411 mRNA_6043 0.68 +1.7
1,509,676 - 14411 mRNA_6043 0.76 -0.2
1,509,677 + 14411 mRNA_6043 0.76 +1.3
1,509,699 - 14411 mRNA_6043 0.78 +1.2
1,509,748 - 14411 mRNA_6043 0.82 -0.7
1,509,761 - 14411 mRNA_6043 0.83 +0.5
1,509,762 + 14411 mRNA_6043 0.83 -1.0
1,509,765 - 14411 mRNA_6043 0.83 +2.7
1,509,833 - 14411 mRNA_6043 0.89 -0.1
1,509,837 - 14411 mRNA_6043 0.89 +2.5
1,509,845 + 14411 mRNA_6043 0.90 +0.7
1,509,850 + +0.0
1,509,900 - +1.1
1,509,909 + -0.1
1,510,121 - +1.5
1,510,121 - +0.9
1,510,250 + +0.8
1,510,276 - -0.3
1,510,283 + -1.1
1,510,429 + +0.3
1,510,435 + +0.9
1,510,708 + 14412 mRNA_6044 0.26 +0.7
1,510,864 - 14412 mRNA_6044 0.41 -0.3
1,510,869 + 14412 mRNA_6044 0.42 -1.4
1,510,869 + 14412 mRNA_6044 0.42 +0.7

Or see this region's nucleotide sequence