Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6067

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14434 and 14435 are separated by 98 nucleotides14435 and 14436 are separated by 249 nucleotides mRNA_6066: 14434 - K20363 YIP1, YIPF5 protein transport protein YIP1, at 1,561,677 to 1,562,701 14434 mRNA_6067: 14435 - K14798 LTV1 protein LTV1, at 1,562,800 to 1,564,980 14435 mRNA_6068: 14436 - K01855 PUS3, DEG1 tRNA pseudouridine38/39 synthase, at 1,565,230 to 1,567,371 14436

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,565,097 + +0.2
1,565,195 - +2.8
1,565,250 + +1.5
1,565,560 - 14436 mRNA_6068 0.15 -1.7

Or see this region's nucleotide sequence