Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6076

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14443 and 14444 are separated by 96 nucleotides mRNA_6075: 14443 - BLAST Thioredoxin/protein disulfide isomerase [Xanthophyllo..., at 1,585,066 to 1,586,603 14443 mRNA_6076: 14444 - Hypothetical Protein, at 1,586,700 to 1,586,903 14444

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,585,787 + 14443 mRNA_6075 0.47 +2.8
1,586,139 - 14443 mRNA_6075 0.70 +0.8
1,586,185 - 14443 mRNA_6075 0.73 +0.0
1,586,226 - 14443 mRNA_6075 0.75 -1.2
1,586,514 + +0.1
1,586,686 + +0.6
1,586,894 + +0.5
1,587,315 + -0.5
1,587,682 - -2.0
1,587,833 - +0.8

Or see this region's nucleotide sequence