Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6128

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14495 and 14496 are separated by 215 nucleotides14496 and 14497 are separated by 173 nucleotides mRNA_6127: 14495 - KOG0772 Uncharacterized conserved protein, contains WD40 repeat, at 68,190 to 70,680 14495 mRNA_6128: 14496 - BLAST DEHA2B11858p [Debaryomyces hansenii CBS767], at 70,896 to 71,507 14496 mRNA_6129: 14497 - Hypothetical Protein, at 71,681 to 73,838 14497

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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70,720 - -0.5
70,828 + +0.2
70,837 - +1.4
70,846 - +0.8
70,999 + 14496 mRNA_6128 0.17 +0.4
71,031 + 14496 mRNA_6128 0.22 -0.1
71,151 + 14496 mRNA_6128 0.42 -0.0
71,296 + 14496 mRNA_6128 0.65 -0.3
71,420 - 14496 mRNA_6128 0.86 -1.5
71,440 + 14496 mRNA_6128 0.89 +0.0
71,443 - 14496 mRNA_6128 0.89 -0.1
71,451 + +0.7
71,470 + -0.0
71,560 + -0.4
71,884 + +0.7
72,444 + 14497 mRNA_6129 0.35 -0.9

Or see this region's nucleotide sequence