Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6137

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14504 and 14505 are separated by 793 nucleotides14505 and 14506 are separated by 365 nucleotides mRNA_6136: 14504 - Hypothetical Protein, at 93,449 to 95,989 14504 mRNA_6137: 14505 - KOG2227 Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase, at 96,783 to 98,967 14505 mRNA_6138: 14506 - Hypothetical Protein, at 99,333 to 99,963 14506

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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95,904 + +0.5
96,029 - +0.5
96,029 - -0.8
96,040 + +1.1
96,074 - +1.1
96,077 - +0.5
96,078 + +1.0
96,084 - +0.4
96,092 - -1.4
96,096 + +0.9
96,102 + +0.4
96,103 + -0.3
96,103 + -0.5
96,107 - -0.0
96,113 - +0.1
96,117 - +0.7
96,122 + +0.1
96,135 - +1.1
96,148 - -0.9
96,201 - +0.5
96,206 - +0.3
96,226 + -0.2
96,226 + -0.7
96,242 - +0.8
96,322 - +1.4
96,346 - +0.4
96,395 + +0.9
96,399 - +1.7
96,406 + +0.3
96,503 - +0.3
96,559 - +0.3
96,560 - +0.1
96,572 - +0.5
96,581 + -0.1
96,585 + -0.1
96,605 + -2.5
96,759 + +0.2
96,767 - -0.3
99,805 + 14506 mRNA_6138 0.75 +0.8
99,956 + +0.3

Or see this region's nucleotide sequence