Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6138

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14505 and 14506 are separated by 365 nucleotides14506 and 14507 are separated by 558 nucleotides mRNA_6137: 14505 - KOG2227 Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase, at 96,783 to 98,967 14505 mRNA_6138: 14506 - Hypothetical Protein, at 99,333 to 99,963 14506 mRNA_6139: 14507 - Hypothetical Protein, at 100,522 to 101,155 14507

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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99,805 + 14506 mRNA_6138 0.75 +0.8
99,956 + +0.3
100,259 - -1.5
100,275 - +0.1
100,287 - -2.5
100,339 + +0.4
100,400 - +0.2
100,490 - -1.1
100,491 + +1.4
100,494 + -0.3
100,499 + -2.0
100,564 - +1.6
100,745 - 14507 mRNA_6139 0.35 +0.1
100,879 - 14507 mRNA_6139 0.56 +1.6

Or see this region's nucleotide sequence