Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6139

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14506 and 14507 are separated by 558 nucleotides mRNA_6138: 14506 - Hypothetical Protein, at 99,333 to 99,963 14506 mRNA_6139: 14507 - Hypothetical Protein, at 100,522 to 101,155 14507

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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99,805 + 14506 mRNA_6138 0.75 +0.8
99,956 + +0.3
100,259 - -1.5
100,275 - +0.1
100,287 - -2.5
100,339 + +0.4
100,400 - +0.2
100,490 - -1.1
100,491 + +1.4
100,494 + -0.3
100,499 + -2.0
100,564 - +1.6
100,745 - 14507 mRNA_6139 0.35 +0.1
100,879 - 14507 mRNA_6139 0.56 +1.6
100,983 - 14507 mRNA_6139 0.73 +0.8
101,047 - 14507 mRNA_6139 0.83 +0.4
101,117 + -0.7
101,169 - -0.7
101,443 + -1.2
101,595 - +2.6
101,866 + -0.6
102,058 - +0.1

Or see this region's nucleotide sequence