Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6162

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14528 and 14529 are separated by 58 nucleotides14529 and 14530 are separated by 192 nucleotides14530 and 14531 are separated by 304 nucleotides mRNA_6160: 14528 - Hypothetical Protein, at 144,643 to 145,145 14528 mRNA_6161: 14529 - Hypothetical Protein, at 145,204 to 145,497 14529 mRNA_6162: 14530 - K11427 DOT1L, DOT1 histone-lysine N-methyltransferase, H3 lysine-79 specific, at 145,690 to 148,355 14530 mRNA_6163: 14531 - HMMPfam-Autophagy protein 16 (ATG16)-PF08614, at 148,660 to 149,493 14531

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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145,064 + 14528 mRNA_6160 0.84 +0.4
145,095 - +0.7
145,361 + 14529 mRNA_6161 0.53 -0.7
145,375 + 14529 mRNA_6161 0.58 -0.1
145,404 + 14529 mRNA_6161 0.68 -1.5
145,405 + 14529 mRNA_6161 0.68 +1.2
145,409 + 14529 mRNA_6161 0.70 -1.8
145,489 - -1.1
145,497 + -0.3
145,524 - +1.5
145,527 + +0.3
145,527 + +1.3
145,527 + +0.4
145,941 + +0.5
145,969 - 14530 mRNA_6162 0.10 +0.6
146,390 - 14530 mRNA_6162 0.26 +0.4
146,628 - 14530 mRNA_6162 0.35 -0.6
146,800 - 14530 mRNA_6162 0.42 +2.3
147,154 + 14530 mRNA_6162 0.55 -1.7
147,229 + 14530 mRNA_6162 0.58 +1.7
147,633 + 14530 mRNA_6162 0.73 +0.4
147,768 - 14530 mRNA_6162 0.78 +0.1
148,090 + -0.2
148,392 - +1.9
148,511 - +1.4
148,533 - +2.9
148,729 + +1.1
148,995 + 14531 mRNA_6163 0.40 +0.9
149,271 + 14531 mRNA_6163 0.73 +0.7
149,277 - 14531 mRNA_6163 0.74 +0.4

Or see this region's nucleotide sequence