Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6193

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14560 and 14561 are separated by 109 nucleotides14561 and 14562 are separated by 135 nucleotides mRNA_6192: 14560 - Hypothetical Protein, at 219,520 to 220,950 14560 mRNA_6193: 14561 - Hypothetical Protein, at 221,060 to 222,668 14561 mRNA_6194: 14562 - SUPERFAMILY--SSF56112, at 222,804 to 223,699 14562

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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220,359 - 14560 mRNA_6192 0.59 +2.2
220,407 + 14560 mRNA_6192 0.62 -1.1
220,931 - +0.6
220,942 + +1.3
221,000 + +1.4
221,130 - -0.5
221,235 - 14561 mRNA_6193 0.11 -0.2
221,246 + 14561 mRNA_6193 0.12 -2.3
221,496 - 14561 mRNA_6193 0.27 +0.6
221,814 + 14561 mRNA_6193 0.47 +0.9
222,267 - 14561 mRNA_6193 0.75 -0.3
222,718 + +0.1
222,825 + +0.9
222,857 - +0.0
222,876 + +1.6
223,013 + 14562 mRNA_6194 0.23 -0.5
223,048 - 14562 mRNA_6194 0.27 +0.5
223,180 - 14562 mRNA_6194 0.42 +0.9
223,575 - 14562 mRNA_6194 0.86 -0.6
223,607 - 14562 mRNA_6194 0.90 +1.2

Or see this region's nucleotide sequence