Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6196

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14563 and 14564 are separated by 452 nucleotides14564 and 14565 are separated by 134 nucleotides mRNA_6195: 14563 - SUPERFAMILY--SSF52047, at 223,877 to 225,110 14563 mRNA_6196: 14564 - Hypothetical Protein, at 225,563 to 227,023 14564 mRNA_6197: 14565 - K01885 EARS, gltX glutamyl-tRNA synthetase, at 227,158 to 229,573 14565

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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224,921 + 14563 mRNA_6195 0.85 -0.4
225,039 + -0.8
225,041 - +1.9
225,065 + -1.2
225,167 + +1.0
225,205 + -0.2
225,383 - +1.1
225,468 + -0.5
225,635 - +1.2
225,793 + 14564 mRNA_6196 0.16 +0.1
225,953 + 14564 mRNA_6196 0.27 +0.9
226,676 - 14564 mRNA_6196 0.76 +1.0
226,823 + 14564 mRNA_6196 0.86 +0.2
226,975 + +0.8
226,986 - +0.8

Or see this region's nucleotide sequence