Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6209

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_6209: 14577 - K03006 RPB1, POLR2A DNA-directed RNA polymerase II subunit RPB1, at 252,444 to 258,337 14577

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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251,589 - +0.1
251,605 + -0.8
251,630 + +0.6
251,634 + +1.8
251,712 + -1.4
251,734 - +1.2
251,888 + -0.6
251,913 + -1.5
252,328 + -2.2
258,418 + -0.9
258,518 + +1.0
258,530 - +0.3
258,555 - -1.5
258,683 - -1.0
258,684 - -0.2
258,703 - +0.8
258,708 + +0.0
258,857 - +1.6
258,986 + -0.4
258,989 + -0.4
259,000 + +0.2
259,012 + +0.1
259,283 + -0.5
259,301 + -0.1

Or see this region's nucleotide sequence