Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6221

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14588 and 14589 are separated by 225 nucleotides14589 and 14590 are separated by 285 nucleotides mRNA_6220: 14588 - Hypothetical Protein, at 282,563 to 283,196 14588 mRNA_6221: 14589 - HMMPfam-BTB/POZ domain-PF00651,ProSiteProfiles-BTB domain profile.-PS50097,SMART-Broad-Complex, Tramtrack and Bric a brac-SM00225,SUPERFAMILY--SSF54695, at 283,422 to 285,141 14589 mRNA_6222: 14590 - K07088 K07088 uncharacterized protein, at 285,427 to 287,812 14590

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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282,448 + +2.0
282,450 - +2.1
282,455 - -0.2
282,457 + -0.5
282,459 - -0.2
282,503 - +2.9
282,812 + 14588 mRNA_6220 0.39 +0.5
283,116 - 14588 mRNA_6220 0.87 +1.3
284,113 - 14589 mRNA_6221 0.40 +0.1
284,283 - 14589 mRNA_6221 0.50 -0.9
284,527 - 14589 mRNA_6221 0.64 +0.7
284,601 + 14589 mRNA_6221 0.69 +0.1
284,701 + 14589 mRNA_6221 0.74 -0.1
284,849 + 14589 mRNA_6221 0.83 -1.0
284,973 - +0.5
285,293 - +1.2
285,310 - +1.9
285,458 - +1.0

Or see this region's nucleotide sequence