Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6233

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14600 and 14601 are separated by 516 nucleotides mRNA_6232: 14600 - K17450 ACO2 homoaconitase, at 308,954 to 311,929 14600 mRNA_6233: 14601 - K16945 CDC11 cell division control protein 11, at 312,446 to 314,280 14601

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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311,694 - -0.2
311,982 - +0.6
312,135 + -0.3
312,145 + +0.4
312,149 + -1.3
312,255 - -0.4
312,276 + +2.4
312,299 + +2.4
312,451 - +1.9
312,593 - -0.8
312,745 - 14601 mRNA_6233 0.16 +0.0
312,858 - 14601 mRNA_6233 0.22 +1.7
313,156 + 14601 mRNA_6233 0.39 +0.5
313,364 - 14601 mRNA_6233 0.50 +1.2
314,459 - +2.9
314,614 - +0.2
315,055 - +0.1
315,070 + +1.8
315,070 + +0.9

Or see this region's nucleotide sequence