Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6241

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14609 and 14610 are separated by 647 nucleotides mRNA_6241: 14609 - Hypothetical Protein, at 333,735 to 334,704 14609 mRNA_6242: 14610 - K00826 E2.6.1.42, ilvE branched-chain amino acid aminotransferase, at 335,352 to 337,546 14610

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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332,817 - -0.9
332,910 - +0.4
333,145 + +0.4
333,148 - +1.3
333,174 + -0.3
333,260 + -0.1
333,304 - -0.5
333,305 + +1.3
333,315 + +1.0
333,342 - -0.8
333,344 - -0.8
333,354 - +0.4
333,356 + +1.3
333,436 - +0.0
333,469 - -0.7
333,495 + +0.1
333,508 + +0.1
333,557 + -0.2
333,565 + +0.1
333,573 - +0.5
333,578 - +1.3
333,580 - -0.5
333,584 - -1.0
333,590 - +0.2
333,592 - -0.4
333,594 - -1.4
333,600 - -0.1
333,602 + -1.3
333,604 + +0.9
333,606 + +0.1
333,607 + -0.2
333,613 - +1.8
333,619 - +1.4
333,623 - +0.1
333,629 + +1.7
333,629 + -0.9
333,629 + +0.7
333,633 - +0.5
333,643 - +0.3
333,646 + -0.5
333,771 - +0.6
333,772 - +1.0
333,782 - -0.4
333,800 + -0.4
333,808 - +2.5
333,951 - 14609 mRNA_6241 0.22 +2.4
333,961 + 14609 mRNA_6241 0.23 -1.2
333,963 + 14609 mRNA_6241 0.24 -0.0
333,976 - 14609 mRNA_6241 0.25 +3.0
334,089 + 14609 mRNA_6241 0.36 +0.6
334,104 - 14609 mRNA_6241 0.38 +0.2
334,114 + 14609 mRNA_6241 0.39 +1.3
334,261 + 14609 mRNA_6241 0.54 -0.5
334,402 + 14609 mRNA_6241 0.69 +0.8
334,534 - 14609 mRNA_6241 0.82 +0.7
334,682 + +0.6
334,682 - +1.1
334,705 + -2.7
334,938 + +0.5
335,105 - +0.1
335,214 + -1.0
335,268 - -0.8
335,289 - +0.1
335,292 + -1.7
335,384 + -1.5
335,432 - +1.2
335,433 + -0.8
335,494 + -0.8
335,574 - 14610 mRNA_6242 0.10 +0.1
335,597 + 14610 mRNA_6242 0.11 +0.6

Or see this region's nucleotide sequence