Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6252

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14619 and 14620 are separated by 55 nucleotides mRNA_6251: 14619 - KOG4188 Uncharacterized conserved protein, at 357,602 to 358,776 14619 mRNA_6252: 14620 - K10845 TTDA, GTF2H5, TFB5 TFIIH basal transcription factor complex TTD-A subunit, at 358,832 to 359,230 14620

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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357,915 + 14619 mRNA_6251 0.27 +0.8
358,507 + 14619 mRNA_6251 0.77 +0.2
358,679 - +0.1
358,826 - +1.7
359,280 + +1.8
359,321 + +0.8
359,321 + +1.6
359,436 + +0.6
359,550 - +0.4
359,692 + -1.2
359,692 - +3.3
359,866 - +0.4
359,892 + +0.0
359,964 + +0.1
360,019 - -0.2
360,032 - +0.8

Or see this region's nucleotide sequence