Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6265

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14632 and 14633 are separated by 371 nucleotides mRNA_6264: 14632 - KOG1550 Extracellular protein SEL-1 and related proteins, at 392,784 to 393,598 14632 mRNA_6265: 14633 - K07897 RAB7A Ras-related protein Rab-7A, at 393,970 to 395,012 14633

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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393,130 - 14632 mRNA_6264 0.42 -2.6
393,395 - 14632 mRNA_6264 0.75 -0.3
393,462 + 14632 mRNA_6264 0.83 +2.4
393,888 - +1.1
395,024 + +2.9
395,159 + +0.4
395,176 - +1.6
395,193 + -0.6
395,313 + +1.9

Or see this region's nucleotide sequence