Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6274

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14642 and 14643 are separated by 360 nucleotides mRNA_6274: 14642 - Hypothetical Protein, at 418,088 to 419,666 14642 mRNA_6275: 14643 - BLAST secreted protein [Melampsora larici-populina 98AG31], at 420,027 to 422,108 14643

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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417,105 + +0.1
417,110 - +1.7
417,128 + -0.1
417,260 + -0.2
417,541 - -0.2
418,450 - 14642 mRNA_6274 0.23 -0.1
419,284 - 14642 mRNA_6274 0.76 -1.4
419,395 - 14642 mRNA_6274 0.83 +0.4
419,542 - +0.3
419,699 - -0.8
419,864 - +0.2
419,868 - +0.3
420,010 - -0.5
420,015 - +0.8
420,496 + 14643 mRNA_6275 0.23 +0.3

Or see this region's nucleotide sequence