Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6280

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14647 and 14648 are separated by 398 nucleotides14648 and 14649 are separated by 301 nucleotides14649 and 14650 are separated by 289 nucleotides mRNA_6279: 14647 - K13110 MFAP1 microfibrillar-associated protein 1, at 428,487 to 430,631 14647 mRNA_6280: 14648 - K14050 RABGGTA geranylgeranyl transferase type-2 subunit alpha, at 431,030 to 432,502 14648 mRNA_6281: 14649 - HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909, at 432,804 to 433,205 14649 mRNA_6282: 14650 - HMMPfam-SET domain-PF00856,HMMPfam-TPR repeat-PF13414,ProSiteProfiles-TPR repeat profile.-PS50005,ProSiteProfiles-SET domain profile.-PS50280,ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SMART-SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain-SM00317,SUPERFAMILY--SSF48452,SUPERFAMILY--SSF82199, at 433,495 to 438,419 14650

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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430,671 + +0.2
430,843 - +2.3
432,700 - +0.7
432,715 + +2.3
432,878 - 14649 mRNA_6281 0.18 -1.1
432,896 + 14649 mRNA_6281 0.23 +1.4
433,280 + +0.5
433,300 - -0.4
433,326 + +3.1

Or see this region's nucleotide sequence