Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6294

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14661 and 14662 are separated by 627 nucleotides14662 and 14663 are separated by 629 nucleotides mRNA_6293: 14661 - K18467 VPS29 vacuolar protein sorting-associated protein 29, at 458,266 to 459,644 14661 mRNA_6294: 14662 - K00928 lysC aspartate kinase, at 460,272 to 462,518 14662 mRNA_6295: 14663 - K11593 ELF2C, AGO eukaryotic translation initiation factor 2C, at 463,148 to 466,558 14663

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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459,371 - 14661 mRNA_6293 0.80 -2.0
459,403 + 14661 mRNA_6293 0.82 +0.0
459,520 + -1.4
459,618 - +0.3
459,630 - -0.6
459,631 - -0.0
459,639 + -2.5
459,640 - +1.4
459,671 - -1.8
459,697 + +0.3
459,698 + -0.5
459,789 - -0.9
459,808 - +0.4
459,810 + -0.4
459,828 + -0.7
459,828 - -0.4
459,841 + +0.5
459,949 - +2.2
462,727 + -0.1
463,164 + +1.5
463,512 - 14663 mRNA_6295 0.11 +0.2

Or see this region's nucleotide sequence