Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6310

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14677 and 14678 are separated by 610 nucleotides14678 and 14679 are separated by 94 nucleotides mRNA_6309: 14677 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 502,808 to 503,552 14677 mRNA_6310: 14678 - Hypothetical Protein, at 504,163 to 504,987 14678 mRNA_6311: 14679 - K03514 PAPD5_7, TRF4 non-canonical poly(A) RNA polymerase PAPD5/7, at 505,082 to 507,881 14679

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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503,220 - 14677 mRNA_6309 0.55 -0.3
503,281 - 14677 mRNA_6309 0.63 -0.3
503,397 - 14677 mRNA_6309 0.79 +1.4
503,432 - 14677 mRNA_6309 0.84 -0.9
503,728 - +0.1
504,034 + +1.8
504,156 + -0.4
504,585 + 14678 mRNA_6310 0.51 -0.5
504,974 + -0.3
505,083 + +0.4
505,161 - +0.8
505,554 + 14679 mRNA_6311 0.17 -0.0
505,649 + 14679 mRNA_6311 0.20 -0.1
505,716 + 14679 mRNA_6311 0.23 +0.3

Or see this region's nucleotide sequence