Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6339

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14706 and 14707 are separated by 600 nucleotides mRNA_6338: 14706 - KOG1515 Arylacetamide deacetylase, at 580,711 to 582,330 14706 mRNA_6339: 14707 - K03265 ETF1, ERF1 peptide chain release factor subunit 1, at 582,931 to 584,919 14707

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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582,249 - -1.5
582,264 - -2.5
582,268 + +0.1
582,277 + -0.1
582,284 - -0.4
582,429 + -0.6
582,606 - -0.4
582,621 - +1.1
582,628 + +0.8
585,092 + -0.8
585,107 - -0.3
585,239 - +0.5
585,406 + -0.8
585,537 - +2.0
585,706 - +1.2
585,827 + -0.7
585,828 - +1.9
585,833 - -0.5

Or see this region's nucleotide sequence