Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6340

Experiment: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14708 and 14709 are separated by 260 nucleotides mRNA_6340: 14708 - BLAST tryptophan--tRNA ligase [Puccinia sorghi], at 586,004 to 586,792 14708 mRNA_6341: 14709 - K01867 WARS, trpS tryptophanyl-tRNA synthetase, at 587,053 to 588,639 14709

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
585,092 + -0.8
585,107 - -0.3
585,239 - +0.5
585,406 + -0.8
585,537 - +2.0
585,706 - +1.2
585,827 + -0.7
585,828 - +1.9
585,833 - -0.5
586,129 - 14708 mRNA_6340 0.16 +1.5
586,275 - 14708 mRNA_6340 0.34 +1.0

Or see this region's nucleotide sequence