Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6360

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14727 and 14728 are separated by 661 nucleotides14728 and 14729 are separated by 763 nucleotides mRNA_6359: 14727 - KOG1812 Predicted E3 ubiquitin ligase, at 630,775 to 633,081 14727 mRNA_6360: 14728 - K17790 TIM22 mitochondrial import inner membrane translocase subunit TIM22, at 633,743 to 634,504 14728 mRNA_6361: 14729 - K08832 SRPK3, STK23 serine/threonine-protein kinase SRPK3, at 635,268 to 638,035 14729

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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632,771 - 14727 mRNA_6359 0.87 +2.3
632,903 + -0.3
632,915 - +0.1
632,951 + -0.1
633,227 - +0.4
633,239 + +0.5
633,350 + +0.7
633,352 - -1.9
633,363 - +0.1
633,368 - +1.3
633,377 + +0.1
633,508 + -0.4
633,508 - +0.7
633,682 - -0.6
633,762 - -0.9
634,513 + -1.7
634,544 - +0.2
634,552 + +1.4
634,635 + +0.1
634,670 - +1.6
634,677 + +1.3
634,679 - +0.5
634,691 - +0.9
634,691 + +1.1
634,711 + +1.4
634,736 + +0.2
634,826 - -0.1
634,998 + +0.9

Or see this region's nucleotide sequence