Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6405

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14772 and 14773 are separated by 282 nucleotides14773 and 14774 are separated by 861 nucleotides mRNA_6404: 14772 - K20280 TRAPPC5, TRS31 trafficking protein particle complex subunit 5, at 733,806 to 734,712 14772 mRNA_6405: 14773 - KOG0725 Reductases with broad range of substrate specificities, at 734,995 to 736,035 14773 mRNA_6406: 14774 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 736,897 to 739,297 14774

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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734,107 + 14772 mRNA_6404 0.33 -0.1
735,088 - +0.4
735,159 - 14773 mRNA_6405 0.16 +1.5
735,500 - 14773 mRNA_6405 0.49 -1.6
735,657 + 14773 mRNA_6405 0.64 +1.3
735,749 - 14773 mRNA_6405 0.72 +1.7
735,768 - 14773 mRNA_6405 0.74 +1.4
735,781 - 14773 mRNA_6405 0.76 +1.6
735,919 - 14773 mRNA_6405 0.89 -0.5
736,093 + -2.7
736,096 - +0.5
736,097 + +1.1
736,098 + -0.2
736,099 - +0.1
736,235 - -2.8
736,382 - +0.8
736,444 + -1.0
736,537 + +0.6
736,674 + +0.3
736,682 + +0.4
736,694 - +0.2
736,831 - -0.6

Or see this region's nucleotide sequence