Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6436

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14803 and 14804 are separated by 192 nucleotides14804 and 14805 are separated by 275 nucleotides mRNA_6435: 14803 - K01930 FPGS folylpolyglutamate synthase, at 794,162 to 796,213 14803 mRNA_6436: 14804 - SMART-Domain with 2 conserved Trp (W) residues-SM00456,SUPERFAMILY--SSF51045, at 796,406 to 797,649 14804 mRNA_6437: 14805 - K07511 ECHS1 enoyl-CoA hydratase, at 797,925 to 799,246 14805

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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796,225 - +1.7
796,249 - +1.9
796,257 + -0.7
796,272 + -1.5
796,325 + +0.8
796,333 - +0.1
796,334 + -0.3
796,335 + -0.9
796,342 + +1.1
796,346 + +2.1
796,504 + +0.9
796,621 - 14804 mRNA_6436 0.17 -1.7
796,634 - 14804 mRNA_6436 0.18 +2.6
796,648 + 14804 mRNA_6436 0.19 +0.6
796,745 - 14804 mRNA_6436 0.27 +2.0
796,750 - 14804 mRNA_6436 0.28 +1.3
796,769 + 14804 mRNA_6436 0.29 +0.7
796,777 + 14804 mRNA_6436 0.30 +1.2
797,172 - 14804 mRNA_6436 0.62 +0.1
797,183 - 14804 mRNA_6436 0.62 +0.7
797,307 - 14804 mRNA_6436 0.72 -1.1
797,501 + 14804 mRNA_6436 0.88 +0.2
797,506 - 14804 mRNA_6436 0.88 +1.7
797,637 - +0.2
797,787 - -0.6
797,881 - +0.0
797,971 + +1.2
798,224 + 14805 mRNA_6437 0.23 +1.1
798,226 - 14805 mRNA_6437 0.23 -1.3
798,394 - 14805 mRNA_6437 0.35 -0.3
798,548 + 14805 mRNA_6437 0.47 +2.2
798,549 + 14805 mRNA_6437 0.47 +2.4
798,566 + 14805 mRNA_6437 0.48 +0.4

Or see this region's nucleotide sequence