Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6446

Experiment: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14813 and 14814 are separated by 146 nucleotides14814 and 14815 are separated by 23 nucleotides mRNA_6445: 14813 - KOG2896 UV radiation resistance associated protein, at 810,637 to 814,255 14813 mRNA_6446: 14814 - Hypothetical Protein, at 814,402 to 816,229 14814 mRNA_6447: 14815 - Hypothetical Protein, at 816,253 to 817,256 14815

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
813,631 + 14813 mRNA_6445 0.83 -0.5
813,643 + 14813 mRNA_6445 0.83 -0.5
813,655 - 14813 mRNA_6445 0.83 -0.1
813,664 - 14813 mRNA_6445 0.84 -0.6
813,810 - 14813 mRNA_6445 0.88 +0.1
813,890 + 14813 mRNA_6445 0.90 -1.1
813,922 + +1.0
813,929 + +1.0
813,989 - -1.3
814,010 + +1.8
814,041 - -0.1
814,055 - +0.4
814,072 + +1.3
814,076 - +0.2
814,196 - +2.9
814,209 + +0.2
814,211 + -0.0
814,222 + -1.0
814,317 - -1.3
814,335 + +1.0
814,357 + +2.2
814,364 - +0.1
814,487 - +0.2
814,500 - +1.8
814,717 - 14814 mRNA_6446 0.17 +0.4
814,718 + 14814 mRNA_6446 0.17 +0.5
814,742 - 14814 mRNA_6446 0.19 +0.9
814,796 + 14814 mRNA_6446 0.22 +1.2
814,881 - 14814 mRNA_6446 0.26 +2.0
814,915 - 14814 mRNA_6446 0.28 +0.5
814,920 + 14814 mRNA_6446 0.28 +2.0
814,977 - 14814 mRNA_6446 0.31 -0.6
815,172 - 14814 mRNA_6446 0.42 -0.4
815,247 + 14814 mRNA_6446 0.46 -2.1
815,420 - 14814 mRNA_6446 0.56 +0.8
815,438 - 14814 mRNA_6446 0.57 +2.5
815,531 + 14814 mRNA_6446 0.62 +1.0
815,546 - 14814 mRNA_6446 0.63 -0.7
815,566 + 14814 mRNA_6446 0.64 +1.0
815,621 + 14814 mRNA_6446 0.67 +1.8
815,670 + 14814 mRNA_6446 0.69 +1.7
815,680 + 14814 mRNA_6446 0.70 +0.2
815,797 + 14814 mRNA_6446 0.76 -1.6
815,823 + 14814 mRNA_6446 0.78 -2.3
815,826 - 14814 mRNA_6446 0.78 +0.3
815,925 - 14814 mRNA_6446 0.83 +1.1
815,928 - 14814 mRNA_6446 0.83 -0.3
815,929 + 14814 mRNA_6446 0.84 +0.2
815,930 - 14814 mRNA_6446 0.84 +0.3
815,932 - 14814 mRNA_6446 0.84 +1.4
816,063 + +2.5
816,069 - +0.8
816,098 + +0.8
816,200 - +1.2
816,580 + 14815 mRNA_6447 0.33 +0.2
816,639 + 14815 mRNA_6447 0.38 -0.3
816,944 + 14815 mRNA_6447 0.69 +2.1
817,012 + 14815 mRNA_6447 0.76 +0.4
817,058 + 14815 mRNA_6447 0.80 -0.1
817,060 - 14815 mRNA_6447 0.80 +2.0

Or see this region's nucleotide sequence