Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6473

Experiment: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14840 and 14841 are separated by 295 nucleotides14841 and 14842 are separated by 392 nucleotides mRNA_6472: 14840 - Hypothetical Protein, at 868,009 to 868,986 14840 mRNA_6473: 14841 - HMMPfam-XPG domain containing-PF12813,SUPERFAMILY--SSF88723, at 869,282 to 871,336 14841 mRNA_6474: 14842 - HMMPfam-Vitamin-D-receptor interacting Mediator subunit 4-PF10018, at 871,729 to 872,994 14842

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
868,387 - 14840 mRNA_6472 0.39 +1.6
868,461 + 14840 mRNA_6472 0.46 +0.2
868,470 - 14840 mRNA_6472 0.47 -0.5
868,794 - 14840 mRNA_6472 0.80 +0.0
868,894 - -0.9
869,057 - -0.9
869,074 + -2.5
869,086 - +1.2
869,215 - -0.4
869,382 + +0.6
869,831 - 14841 mRNA_6473 0.27 -2.2
869,941 - 14841 mRNA_6473 0.32 +0.7
870,070 - 14841 mRNA_6473 0.38 +1.1
870,076 + 14841 mRNA_6473 0.39 -2.4
870,199 - 14841 mRNA_6473 0.45 +1.3
870,385 + 14841 mRNA_6473 0.54 -0.4
870,511 + 14841 mRNA_6473 0.60 +0.9
871,068 - 14841 mRNA_6473 0.87 +0.3
871,069 + 14841 mRNA_6473 0.87 +0.0
871,165 - +0.4
871,284 - -0.2
871,836 - -1.2
871,982 - 14842 mRNA_6474 0.20 +0.2
872,003 - 14842 mRNA_6474 0.22 +1.1

Or see this region's nucleotide sequence