Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6484

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14851 and 14852 overlap by 11 nucleotides mRNA_6483: 14851 - Hypothetical Protein, at 894,956 to 895,414 14851 mRNA_6484: 14852 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 895,404 to 896,559 14852

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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894,431 - +0.2
894,460 - -0.8
894,465 + -1.2
894,480 + +0.1
894,514 + +1.2
894,561 - +0.3
894,596 + -0.8
894,755 + +1.7
894,768 - -0.2
894,788 + +1.5
894,802 + +1.0
895,140 - 14851 mRNA_6483 0.40 -0.6
895,283 - 14851 mRNA_6483 0.71 +0.2
895,321 + 14851 mRNA_6483 0.80 -0.4
895,354 - 14851 mRNA_6483 0.87 -0.9
895,446 - -0.2
895,458 + +0.2
895,490 + +1.4
895,504 + +1.9
895,636 - 14852 mRNA_6484 0.20 +0.4
895,650 + 14852 mRNA_6484 0.21 +0.3
895,651 + 14852 mRNA_6484 0.21 +0.3
895,652 + 14852 mRNA_6484 0.21 +0.5
896,183 + 14852 mRNA_6484 0.67 -2.4
896,640 + +0.5
897,065 - +1.4
897,339 + +1.2
897,387 + -1.1

Or see this region's nucleotide sequence