Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6502

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14869 and 14870 are separated by 316 nucleotides14870 and 14871 are separated by 640 nucleotides mRNA_6501: 14869 - K06902 UMF1 MFS transporter, UMF1 family, at 935,425 to 937,523 14869 mRNA_6502: 14870 - K02971 RP-S21e, RPS21 small subunit ribosomal protein S21e, at 937,840 to 938,370 14870 mRNA_6503: 14871 - K11360 SPT8 transcriptional activator SPT8, at 939,011 to 940,996 14871

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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936,882 - 14869 mRNA_6501 0.69 -0.9
936,883 + 14869 mRNA_6501 0.69 -1.1
937,022 - 14869 mRNA_6501 0.76 -1.9
937,335 + +3.0
937,339 - -0.2
937,442 - +1.0
937,460 + +0.6
937,465 + -0.3
937,479 + -0.9
937,787 + -0.7
938,795 + +0.4
938,796 - +1.3
938,798 - +0.9
938,798 - +0.3
938,809 + +0.1
938,815 + +0.3
938,938 + -0.0
938,965 - +1.0
939,092 - -0.2
939,106 - -0.6
939,113 - +0.2
939,123 - -0.4
939,128 + +0.5

Or see this region's nucleotide sequence