Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6519

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14886 and 14887 are separated by 291 nucleotides14887 and 14888 are separated by 272 nucleotides mRNA_6518: 14886 - K05712 mhpA 3-(3-hydroxy-phenyl)propionate hydroxylase, at 982,415 to 984,966 14886 mRNA_6519: 14887 - K11806 WDSOF1 WD repeat and SOF domain-containing protein 1, at 985,258 to 987,431 14887 mRNA_6520: 14888 - K06883 K06883 uncharacterized protein, at 987,704 to 989,005 14888

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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984,283 - 14886 mRNA_6518 0.73 +1.8
984,416 + 14886 mRNA_6518 0.78 -0.4
984,465 + 14886 mRNA_6518 0.80 +1.8
984,749 + -3.0
984,750 + +0.2
984,753 - -1.6
984,756 + +0.7
985,016 - -0.2
985,029 + -0.0
985,030 + +1.2
985,031 - -0.5
985,042 - +1.8
985,057 + -0.7
985,057 - -0.3
985,069 + +0.6
985,084 - +0.8
985,088 - -1.0
985,112 + -0.1
985,172 + -0.2
985,183 - -0.0
985,205 - -0.4
985,208 + -0.6
985,241 + +0.4
987,552 + -0.4
987,553 + +1.9

Or see this region's nucleotide sequence