Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6521

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14888 and 14889 are separated by 340 nucleotides14889 and 14890 are separated by 252 nucleotides mRNA_6520: 14888 - K06883 K06883 uncharacterized protein, at 987,704 to 989,005 14888 mRNA_6521: 14889 - K14788 NOL10, ENP2 ribosome biogenesis protein ENP2, at 989,346 to 992,026 14889 mRNA_6522: 14890 - K19871 SALL sal-like protein, at 992,279 to 994,205 14890

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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989,003 + +0.2
989,007 - -0.8
989,135 - -0.6
989,149 - +1.7
989,169 + +1.1
989,203 - +2.6
991,729 + 14889 mRNA_6521 0.89 -0.7
992,009 - +0.1
992,021 - +0.2
992,115 + +0.5
992,132 + -1.1
992,133 + -0.3
992,159 + -0.5
992,205 + -0.2
992,246 - +0.2
992,319 + +2.2
992,477 + 14890 mRNA_6522 0.10 +0.7
992,770 - 14890 mRNA_6522 0.25 +1.2
992,771 + 14890 mRNA_6522 0.26 +0.6
992,780 - 14890 mRNA_6522 0.26 -0.1
992,851 + 14890 mRNA_6522 0.30 -1.7
992,939 - 14890 mRNA_6522 0.34 +0.2

Or see this region's nucleotide sequence