Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6544

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14911 and 14912 are separated by 695 nucleotides mRNA_6543: 14911 - K08712 ABCG2.SNQ2 ATP-binding cassette, subfamily G (WHITE), member 2, SNQ2, at 1,039,593 to 1,046,261 14911 mRNA_6544: 14912 - K02138 ATPeF0D, ATP5H, ATP7 F-type H+-transporting ATPase subunit d, at 1,046,957 to 1,048,093 14912

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,045,977 - -1.0
1,045,983 + +0.8
1,045,986 - +0.2
1,046,104 - +1.4
1,046,109 - -0.4
1,046,109 - +3.1
1,046,112 + -0.5
1,046,116 + +0.7
1,046,122 - +1.4
1,046,140 - -1.4
1,046,140 - +0.3
1,046,142 - +1.6
1,046,142 + +2.3
1,046,143 + -0.4
1,046,144 + +0.8
1,046,145 - +0.5
1,046,147 + -0.0
1,046,147 + +0.3
1,046,147 + +0.5
1,046,148 + +0.9
1,046,148 - +0.0
1,046,148 - +1.2
1,046,150 + +1.2
1,046,150 + +0.7
1,046,153 - +0.2
1,046,158 + +1.1
1,046,158 + -1.1
1,046,159 - -0.1
1,046,159 - +0.7
1,046,159 + +3.2
1,046,160 + -0.0
1,046,160 - +1.4
1,046,162 + +0.7
1,046,163 + -0.3
1,046,166 + +2.0
1,046,169 + -0.6
1,046,173 - +0.1
1,046,189 + -1.1
1,046,198 - +0.9
1,046,199 - -0.4
1,046,206 - +0.2
1,046,206 + -1.9
1,046,212 + -1.0
1,046,232 + +1.5
1,046,245 - +0.1
1,046,251 - +0.3
1,046,252 + -0.7
1,046,257 + +0.0
1,046,270 + -1.4
1,046,272 + +0.3
1,046,277 - +0.8
1,046,278 - +1.2
1,046,285 + -0.8
1,046,289 - +0.4
1,046,290 - +0.8
1,046,291 + +0.2
1,046,299 - -1.6
1,046,307 + -1.0
1,046,308 - -0.5
1,046,315 + +0.0
1,046,328 + +0.5
1,046,332 + -2.0
1,046,348 - +0.4
1,046,355 - +0.9
1,046,362 + +0.1
1,046,362 - +1.8
1,046,367 - +0.5
1,046,373 - -0.1
1,046,378 + +0.1
1,046,380 + -2.1
1,046,386 + -0.4
1,046,387 - +0.9
1,046,387 - +0.2
1,046,389 + +0.2
1,046,408 + -0.4
1,046,411 + -0.2
1,046,420 - +0.5
1,046,420 + -0.4
1,046,421 - +0.0
1,046,426 - +2.1
1,046,428 + +0.6
1,046,432 + +0.4
1,046,433 - -0.2
1,046,443 - -0.1
1,046,448 - +0.6
1,046,463 - +0.3
1,046,470 + +0.1
1,046,479 - +3.0
1,046,483 - +2.3
1,046,486 + +1.0
1,046,490 + +2.7
1,046,494 + -0.2
1,046,497 - +0.2
1,046,508 - +2.5
1,046,523 + -1.1
1,046,524 - +0.7
1,046,542 + +1.4
1,046,557 - +2.1
1,046,576 + +1.5
1,046,577 - -2.2
1,046,580 + -0.4
1,046,591 - +0.6
1,046,638 - +1.2
1,046,657 + -0.2
1,046,785 + +0.5
1,046,811 + +0.4
1,048,134 - -1.3
1,048,134 + +4.0
1,048,136 - -0.0
1,048,136 + -1.5
1,048,141 + +2.2
1,048,142 + +0.8
1,048,153 - +1.1
1,048,156 - +1.6
1,048,185 + +2.9
1,048,192 - -0.8
1,048,208 + +0.9
1,048,299 - +1.3
1,048,325 - -1.2
1,048,326 + -0.2
1,048,375 + -0.7
1,048,460 - +2.7
1,048,604 - -0.1

Or see this region's nucleotide sequence