Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6564

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14931 and 14932 are separated by 334 nucleotides14932 and 14933 are separated by 31 nucleotides mRNA_6563: 14931 - Hypothetical Protein, at 1,107,089 to 1,108,323 14931 mRNA_6564: 14932 - Hypothetical Protein, at 1,108,658 to 1,110,083 14932 mRNA_6565: 14933 - SUPERFAMILY--SSF52777, at 1,110,115 to 1,112,208 14933

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,107,897 - 14931 mRNA_6563 0.65 +0.6
1,108,361 + +0.5
1,108,388 - +1.0
1,108,434 - -0.3
1,108,488 - -0.1
1,108,997 - 14932 mRNA_6564 0.24 +1.2
1,109,054 + 14932 mRNA_6564 0.28 -1.4
1,109,747 - 14932 mRNA_6564 0.76 -0.1
1,109,771 - 14932 mRNA_6564 0.78 +0.0
1,109,779 + 14932 mRNA_6564 0.79 +0.9
1,109,780 + 14932 mRNA_6564 0.79 +0.3
1,110,031 - -0.4
1,110,348 - 14933 mRNA_6565 0.11 +0.9
1,110,377 + 14933 mRNA_6565 0.13 +2.2
1,110,768 - 14933 mRNA_6565 0.31 +0.4
1,110,937 - 14933 mRNA_6565 0.39 -0.6
1,111,054 - 14933 mRNA_6565 0.45 -0.2

Or see this region's nucleotide sequence