Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6573

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14940 and 14941 are separated by 275 nucleotides14941 and 14942 are separated by 320 nucleotides mRNA_6572: 14940 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-Nuclear transport factor 2 (NTF2) domain-PF02136,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,ProSiteProfiles-Nuclear transport factor 2 domain profile.-PS50177,SMART-WD40 repeats-SM00320,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF50998,SUPERFAMILY--SSF54427,SUPERFAMILY--SSF54928, at 1,131,312 to 1,136,542 14940 mRNA_6573: 14941 - K20472 COPZ, RET3 coatomer subunit zeta, at 1,136,818 to 1,137,633 14941 mRNA_6574: 14942 - K18258 CRYM thiomorpholine-carboxylate dehydrogenase, at 1,137,954 to 1,139,326 14942

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,135,883 + 14940 mRNA_6572 0.87 +0.3
1,136,091 + +0.0
1,136,216 + -0.3
1,136,342 - +2.4
1,136,498 - +0.5
1,136,623 - -0.1
1,138,083 - +0.8
1,138,083 + +0.4
1,138,114 - 14942 mRNA_6574 0.12 +0.4
1,138,251 - 14942 mRNA_6574 0.22 +0.3
1,138,262 + 14942 mRNA_6574 0.22 +1.5
1,138,409 - 14942 mRNA_6574 0.33 -0.1
1,138,528 - 14942 mRNA_6574 0.42 +0.8

Or see this region's nucleotide sequence