Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6630

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14997 and 14998 are separated by 269 nucleotides14998 and 14999 are separated by 987 nucleotides mRNA_6629: 14997 - KOG0538 Glycolate oxidase, at 1,287,348 to 1,288,864 14997 mRNA_6630: 14998 - KOG0463 GTP-binding protein GP-1, at 1,289,134 to 1,291,878 14998 mRNA_6631: 14999 - K11429 SUV420H histone-lysine N-methyltransferase SUV420H, at 1,292,866 to 1,293,273 14999

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,288,171 - 14997 mRNA_6629 0.54 +0.8
1,288,262 + 14997 mRNA_6629 0.60 +0.4
1,288,371 + 14997 mRNA_6629 0.67 -0.2
1,288,703 + 14997 mRNA_6629 0.89 -2.9
1,288,809 + +0.5
1,288,959 - +0.5
1,289,075 - +1.6
1,289,345 + -0.8
1,289,384 - +0.3
1,289,387 + +1.0
1,289,388 + -0.1
1,289,508 - 14998 mRNA_6630 0.14 -0.2
1,289,677 + 14998 mRNA_6630 0.20 +2.3
1,289,846 + 14998 mRNA_6630 0.26 -0.6
1,290,020 - 14998 mRNA_6630 0.32 +0.6
1,290,020 + 14998 mRNA_6630 0.32 +0.1
1,290,155 + 14998 mRNA_6630 0.37 -1.0
1,290,300 + 14998 mRNA_6630 0.42 +1.1
1,290,408 + 14998 mRNA_6630 0.46 -0.2
1,290,431 - 14998 mRNA_6630 0.47 +0.6
1,290,547 + 14998 mRNA_6630 0.51 -0.7
1,291,027 + 14998 mRNA_6630 0.69 -0.4
1,291,164 - 14998 mRNA_6630 0.74 -0.4
1,291,172 + 14998 mRNA_6630 0.74 +0.6
1,291,180 - 14998 mRNA_6630 0.75 +3.3
1,291,330 + 14998 mRNA_6630 0.80 +1.4
1,291,354 + 14998 mRNA_6630 0.81 +0.0
1,291,448 + 14998 mRNA_6630 0.84 +0.1
1,291,485 - 14998 mRNA_6630 0.86 +0.5
1,291,490 + 14998 mRNA_6630 0.86 +1.9
1,291,610 - +1.5
1,291,626 + -0.4
1,291,629 + +0.6
1,291,794 + +0.5
1,291,880 + -1.2
1,292,029 - -0.3
1,292,047 - -1.0
1,292,059 - +0.2
1,292,060 - -1.0
1,292,338 + +1.2
1,292,341 + +0.3
1,292,343 - -0.3
1,292,411 + -1.9
1,292,415 + -0.4
1,292,463 - +0.5
1,292,475 - +0.3
1,292,501 - -0.1
1,292,515 - +1.2
1,292,592 - +0.3
1,292,646 - +0.0
1,292,693 - -0.4
1,292,846 - -0.3

Or see this region's nucleotide sequence