Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6634

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15001 and 15002 are separated by 656 nucleotides15002 and 15003 are separated by 356 nucleotides mRNA_6633: 15001 - KOG1114 Tripeptidyl peptidase II, at 1,296,721 to 1,300,268 15001 mRNA_6634: 15002 - K02734 PSMB2 20S proteasome subunit beta 4, at 1,300,925 to 1,301,957 15002 mRNA_6635: 15003 - HMMPfam-Peptidase family M48-PF01435, at 1,302,314 to 1,305,791 15003

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,300,060 - -0.1
1,300,183 - -1.7
1,300,219 + -0.4
1,300,245 + +0.6
1,300,687 + -0.5
1,300,827 + +1.0
1,301,982 + -0.3
1,301,983 - -0.0
1,301,988 + +0.8
1,302,000 - +0.2
1,302,010 + +1.9
1,302,112 - +0.5
1,302,128 - -0.6
1,302,130 - +3.2
1,302,554 + +2.9
1,302,572 - -0.7
1,302,583 - +0.4
1,302,731 - 15003 mRNA_6635 0.12 +1.0
1,302,740 + 15003 mRNA_6635 0.12 +2.5
1,302,895 + 15003 mRNA_6635 0.17 +1.7

Or see this region's nucleotide sequence