Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6665

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15033 and 15034 are separated by 228 nucleotides mRNA_6665: 15033 - K01952 purL, PFAS phosphoribosylformylglycinamidine synthase, at 1,389,385 to 1,393,556 15033 mRNA_6666: 15034 - K18423 CSE1, CAS, XPO2 exportin-2 (importin alpha re-exporter), at 1,393,785 to 1,397,625 15034

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,388,500 - -0.5
1,388,522 + -0.3
1,388,647 + +2.4
1,388,796 + +0.5
1,388,797 + -2.0
1,388,922 - +1.8
1,388,943 + -1.7
1,388,952 - -0.0
1,388,955 + +1.8
1,389,084 + +0.7
1,389,283 - -0.3
1,391,905 + 15033 mRNA_6665 0.60 +0.6
1,392,940 - 15033 mRNA_6665 0.85 +0.4
1,393,689 - -0.9

Or see this region's nucleotide sequence