Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6686

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15053 and 15054 are separated by 484 nucleotides15054 and 15055 are separated by 430 nucleotides mRNA_6685: 15053 - Hypothetical Protein, at 1,438,698 to 1,439,183 15053 mRNA_6686: 15054 - K02875 RP-L14e, RPL14 large subunit ribosomal protein L14e, at 1,439,668 to 1,440,386 15054 mRNA_6687: 15055 - BLAST Wings apart-like protein [Xanthophyllomyces dendrorhous], at 1,440,817 to 1,442,910 15055

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,438,792 + 15053 mRNA_6685 0.19 +0.0
1,439,119 + 15053 mRNA_6685 0.87 +0.8
1,439,127 - 15053 mRNA_6685 0.88 +0.2
1,439,238 - -0.7
1,440,454 - -0.8
1,440,587 + -0.2
1,440,590 - +0.1
1,440,596 + +1.3
1,440,608 - +0.9
1,440,614 - +0.5
1,440,748 - +0.5
1,440,872 - +2.3
1,441,166 + 15055 mRNA_6687 0.17 +0.8

Or see this region's nucleotide sequence