Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6740

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15108 and 15109 are separated by 210 nucleotides mRNA_6740: 15108 - Interpro Dynactin subunit p22, at 37,407 to 38,257 15108 mRNA_6741: 15109 - K01657 trpE anthranilate synthase component I, at 38,468 to 40,696 15109

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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36,481 - +0.3
36,485 - +0.2
36,499 + -1.1
36,625 - -0.7
36,664 + +0.1
36,747 - -0.1
36,753 - +0.4
36,802 - +0.3
36,910 - -0.3
36,914 - +2.2
36,918 + +1.3
36,948 + +1.3
36,972 - +1.9
36,982 + +0.4
36,991 - +1.1
37,071 + +2.0
37,118 + -0.4
37,178 + +0.7
37,188 + +0.5
37,196 - +1.8
37,216 - +2.0
37,230 - +1.1
37,275 - -1.1
37,277 - +0.4
37,281 - -0.4
37,389 - +0.5
37,394 + +2.5
37,396 - -1.1
37,399 - +0.5
38,263 - +1.2
38,271 + +3.3
38,283 - +1.2
38,371 - +0.0
38,374 - +0.2
38,393 - +2.3
38,398 + +0.4
38,408 + +0.1

Or see this region's nucleotide sequence