Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6756

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15123 and 15124 are separated by 121 nucleotides15124 and 15125 are separated by 420 nucleotides mRNA_6755: 15123 - K14319 RANGAP1 Ran GTPase-activating protein 1, at 65,220 to 66,894 15123 mRNA_6756: 15124 - K02906 RP-L3, MRPL3, rplC large subunit ribosomal protein L3, at 67,016 to 68,273 15124 mRNA_6757: 15125 - K11838 USP7, UBP15 ubiquitin carboxyl-terminal hydrolase 7, at 68,694 to 73,091 15125

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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66,969 + -0.8
66,976 - -0.0
66,980 + +0.7
67,016 + -2.2
68,334 + -0.5
68,431 - +0.7
68,439 + +0.3
68,462 - +0.3
68,464 + +0.7
68,474 - +1.1
68,479 + +0.7
68,480 - +0.7
68,480 - +1.7
68,483 + +0.1
68,486 + -0.5
68,489 + -0.0
68,493 + +0.5
68,499 + -0.7
68,636 + +1.3
69,086 - +3.1

Or see this region's nucleotide sequence