Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6761

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15128 and 15129 are separated by 304 nucleotides15129 and 15130 are separated by 236 nucleotides mRNA_6760: 15128 - Hypothetical Protein, at 77,632 to 78,666 15128 mRNA_6761: 15129 - K00944 AK3 nucleoside-triphosphate--adenylate kinase, at 78,971 to 80,180 15129 mRNA_6762: 15130 - K02942 RP-LP1, RPLP1 large subunit ribosomal protein LP1, at 80,417 to 80,968 15130

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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78,588 - +0.6
78,594 + +0.1
78,864 - -1.8
78,867 + +1.8
78,875 + +1.4
79,038 + +0.8
79,131 + 15129 mRNA_6761 0.13 +0.0
79,164 - 15129 mRNA_6761 0.16 +0.1
79,172 - 15129 mRNA_6761 0.17 +0.8
79,348 - 15129 mRNA_6761 0.31 -0.9
79,446 + 15129 mRNA_6761 0.39 -1.7
79,481 + 15129 mRNA_6761 0.42 +0.9
79,606 + 15129 mRNA_6761 0.52 -0.3
79,666 + 15129 mRNA_6761 0.57 +0.0
79,745 + 15129 mRNA_6761 0.64 +1.2
79,747 - 15129 mRNA_6761 0.64 +3.0
79,848 - 15129 mRNA_6761 0.72 +0.7
80,023 - 15129 mRNA_6761 0.87 -0.6
80,049 - 15129 mRNA_6761 0.89 +2.3
80,308 + -0.2

Or see this region's nucleotide sequence