Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6766

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15133 and 15134 are separated by 125 nucleotides15134 and 15135 are separated by 123 nucleotides mRNA_6765: 15133 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 86,718 to 88,049 15133 mRNA_6766: 15134 - HMMPfam-PIG-X / PBN1-PF08320,SMART-PIG-X / PBN1-SM00780, at 88,175 to 88,997 15134 mRNA_6767: 15135 - KOG0393 Ras-related small GTPase, Rho type, at 89,121 to 90,132 15135

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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87,316 - 15133 mRNA_6765 0.45 +0.1
87,551 - 15133 mRNA_6765 0.63 +0.5
87,708 + 15133 mRNA_6765 0.74 +2.3
88,136 - -0.1
88,151 + -1.3
88,168 + +0.8

Or see this region's nucleotide sequence