Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6775

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15141 and 15142 are separated by 169 nucleotides15142 and 15143 are separated by 143 nucleotides mRNA_6773: 15141 - HMMPfam-Cation transporter/ATPase, N-terminus-PF00690,SUPERFAMILY--SSF81665, at 103,147 to 103,439 15141 mRNA_6774: 15142 - HMMPfam-Mitochondrial ribosomal protein L31-PF09784, at 103,609 to 104,047 15142 mRNA_6775: 15143 - K14784 CMS1 protein CMS1, at 104,191 to 105,444 15143

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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103,568 - +0.0
103,720 + 15142 mRNA_6774 0.25 -1.3
104,620 - 15143 mRNA_6775 0.34 -0.7
105,369 - -1.4
105,377 - -1.0

Or see this region's nucleotide sequence