Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6791

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15158 and 15159 are separated by 92 nucleotides15159 and 15160 are separated by 367 nucleotides mRNA_6790: 15158 - K00671 E2.3.1.97, NMT glycylpeptide N-tetradecanoyltransferase, at 133,483 to 136,016 15158 mRNA_6791: 15159 - K00888 PI4KA phosphatidylinositol 4-kinase A, at 136,109 to 143,352 15159 mRNA_6792: 15160 - K14396 PABPN1, PABP2 polyadenylate-binding protein 2, at 143,720 to 144,685 15160

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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136,054 - +0.2
136,066 - +0.6
136,069 - -1.9
136,071 + +0.5
136,079 + -0.1
136,093 + +0.7
136,093 + +1.6
137,994 - 15159 mRNA_6791 0.26 -1.4
138,144 + 15159 mRNA_6791 0.28 -2.8
139,098 - 15159 mRNA_6791 0.41 -0.6
143,407 + -0.3
143,850 - 15160 mRNA_6792 0.13 -0.1
143,906 + 15160 mRNA_6792 0.19 +0.0
144,023 + 15160 mRNA_6792 0.31 +0.2
144,186 + 15160 mRNA_6792 0.48 -0.1

Or see this region's nucleotide sequence