Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6814

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15181 and 15182 are separated by 940 nucleotides15182 and 15183 are separated by 379 nucleotides mRNA_6813: 15181 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 198,108 to 198,984 15181 mRNA_6814: 15182 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 199,925 to 200,316 15182 mRNA_6815: 15183 - HMMPfam-PUB domain-PF09409,SUPERFAMILY--SSF143503, at 200,696 to 201,916 15183

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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199,041 - +0.4
199,060 + -0.3
199,143 + +1.0
199,220 - -2.6
199,334 - -1.3
199,338 + +2.4
199,364 - -1.0
199,713 + +0.1
200,212 + 15182 mRNA_6814 0.73 -0.1
200,213 + 15182 mRNA_6814 0.73 +3.3
200,227 + 15182 mRNA_6814 0.77 +0.3
200,227 + 15182 mRNA_6814 0.77 -0.6
200,408 + -0.8
200,539 + -1.9
200,681 + +2.4
200,821 - 15183 mRNA_6815 0.10 -0.9
201,087 + 15183 mRNA_6815 0.32 -0.4
201,095 - 15183 mRNA_6815 0.33 +1.1
201,116 - 15183 mRNA_6815 0.34 +1.1
201,195 - 15183 mRNA_6815 0.41 +1.2

Or see this region's nucleotide sequence