Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6841

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15208 and 15209 are separated by 116 nucleotides15209 and 15210 are separated by 45 nucleotides mRNA_6840: 15208 - SUPERFAMILY--SSF81383, at 245,238 to 247,225 15208 mRNA_6841: 15209 - K14328 UPF3, RENT3 regulator of nonsense transcripts 3, at 247,342 to 248,930 15209 mRNA_6842: 15210 - K02605 ORC3 origin recognition complex subunit 3, at 248,976 to 251,916 15210

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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246,500 - 15208 mRNA_6840 0.63 +0.6
246,529 - 15208 mRNA_6840 0.65 +0.0
246,529 + 15208 mRNA_6840 0.65 +1.6
246,555 - 15208 mRNA_6840 0.66 -1.2
246,571 - 15208 mRNA_6840 0.67 +1.2
246,699 - 15208 mRNA_6840 0.73 +0.1
246,707 + 15208 mRNA_6840 0.74 -0.7
246,754 - 15208 mRNA_6840 0.76 +1.2
246,754 - 15208 mRNA_6840 0.76 +0.1
246,828 + 15208 mRNA_6840 0.80 +3.0
246,828 + 15208 mRNA_6840 0.80 +1.6
247,123 - -0.5
247,269 + +2.0
247,270 - +0.1
247,275 + +0.5
247,293 + +0.8
248,623 - 15209 mRNA_6841 0.81 +2.6
248,628 + 15209 mRNA_6841 0.81 -0.5
249,540 + 15210 mRNA_6842 0.19 +2.5

Or see this region's nucleotide sequence