Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6852

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15220 and 15221 are separated by 430 nucleotides mRNA_6852: 15220 - KOG1337 N-methyltransferase, at 277,485 to 279,463 15220 mRNA_6853: 15221 - Interpro Altered inheritance of mitochondria 5, at 279,894 to 280,567 15221

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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276,506 - +0.6
276,515 + -0.7
276,525 - -0.5
276,615 - -0.9
276,639 - +0.7
276,952 + -0.5
277,098 + -0.8
277,105 + -0.1
277,112 + +0.2
277,121 - -1.4
277,267 - +0.8
277,404 + -0.2
277,447 + -0.1
277,447 + +2.0
277,579 - -0.2
277,735 - 15220 mRNA_6852 0.13 +0.9
277,743 - 15220 mRNA_6852 0.13 +1.2
278,006 + 15220 mRNA_6852 0.26 -0.2
278,388 + 15220 mRNA_6852 0.46 -0.0
278,391 - 15220 mRNA_6852 0.46 +2.3
279,322 + +1.7
279,323 - -0.9
279,460 + +1.4
279,629 - +1.5
279,750 - +1.7
280,076 + 15221 mRNA_6853 0.27 +0.1
280,083 - 15221 mRNA_6853 0.28 +2.0
280,325 - 15221 mRNA_6853 0.64 +0.8
280,326 - 15221 mRNA_6853 0.64 +1.9
280,328 - 15221 mRNA_6853 0.64 +0.7
280,344 + 15221 mRNA_6853 0.67 +0.6
280,433 - 15221 mRNA_6853 0.80 -1.6

Or see this region's nucleotide sequence