Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6856

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15223 and 15224 are separated by 288 nucleotides mRNA_6855: 15223 - KOG1601 GATA-4/5/6 transcription factors, at 282,233 to 283,773 15223 mRNA_6856: 15224 - K10395 KIF4_21_27 kinesin family member 4/21/27, at 284,062 to 291,229 15224

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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283,072 + 15223 mRNA_6855 0.54 -0.6
283,225 - 15223 mRNA_6855 0.64 +2.8
283,306 + 15223 mRNA_6855 0.70 +0.3
283,374 + 15223 mRNA_6855 0.74 +0.8
283,528 - 15223 mRNA_6855 0.84 +1.1
283,671 - +2.7
283,675 + +0.4
283,681 - +1.9
283,682 - +0.6
283,684 - +0.6
283,687 - +1.6
283,703 + -0.2
283,710 - +2.3
283,718 + -0.0
283,834 + -0.1
283,985 + +2.7
283,989 - -0.2
283,991 - +1.0
283,991 + +1.1
284,019 - +0.2
284,134 - +3.3
284,136 - -0.6
284,286 - +2.7
284,468 - +0.4
284,652 + +0.9
284,858 - 15224 mRNA_6856 0.11 +2.4
284,911 + 15224 mRNA_6856 0.12 +0.6
285,014 + 15224 mRNA_6856 0.13 +1.8
285,319 - 15224 mRNA_6856 0.18 -1.3
285,337 - 15224 mRNA_6856 0.18 -0.2
285,396 + 15224 mRNA_6856 0.19 +1.8
285,603 - 15224 mRNA_6856 0.21 +1.8
285,605 + 15224 mRNA_6856 0.22 -1.5
285,861 - 15224 mRNA_6856 0.25 +1.0
286,103 + 15224 mRNA_6856 0.28 -0.5
286,218 + 15224 mRNA_6856 0.30 +0.3
286,221 + 15224 mRNA_6856 0.30 -0.7
286,246 + 15224 mRNA_6856 0.30 +1.7
286,372 - 15224 mRNA_6856 0.32 +4.6
286,373 + 15224 mRNA_6856 0.32 +1.1
286,565 + 15224 mRNA_6856 0.35 +1.6
286,578 - 15224 mRNA_6856 0.35 +0.3
286,637 - 15224 mRNA_6856 0.36 +1.7
286,715 + 15224 mRNA_6856 0.37 +1.8
286,721 + 15224 mRNA_6856 0.37 +1.2
286,773 + 15224 mRNA_6856 0.38 -0.7
286,795 - 15224 mRNA_6856 0.38 +0.0
286,972 + 15224 mRNA_6856 0.41 +1.4
287,068 + 15224 mRNA_6856 0.42 +0.2
287,125 - 15224 mRNA_6856 0.43 -1.5
287,133 + 15224 mRNA_6856 0.43 +0.3
287,144 - 15224 mRNA_6856 0.43 +0.1
287,584 - 15224 mRNA_6856 0.49 +1.1
287,615 + 15224 mRNA_6856 0.50 -0.2
287,619 + 15224 mRNA_6856 0.50 +0.1
287,860 + 15224 mRNA_6856 0.53 +1.5
287,924 - 15224 mRNA_6856 0.54 +3.2
288,249 - 15224 mRNA_6856 0.58 +0.4
288,326 - 15224 mRNA_6856 0.59 -1.1
288,401 + 15224 mRNA_6856 0.61 -0.8
288,416 - 15224 mRNA_6856 0.61 -0.2
288,688 + 15224 mRNA_6856 0.65 +0.4
288,693 + 15224 mRNA_6856 0.65 -0.4
288,797 + 15224 mRNA_6856 0.66 +0.9
289,385 - 15224 mRNA_6856 0.74 +0.3
289,601 + 15224 mRNA_6856 0.77 +0.8
289,864 + 15224 mRNA_6856 0.81 +1.1
290,024 - 15224 mRNA_6856 0.83 -0.5
290,215 - 15224 mRNA_6856 0.86 +0.1
290,323 - 15224 mRNA_6856 0.87 +0.9
290,330 + 15224 mRNA_6856 0.87 +1.5
290,424 - 15224 mRNA_6856 0.89 -0.1
290,470 + 15224 mRNA_6856 0.89 -0.2
290,667 - -0.7
290,778 + -1.1
290,887 + +0.8
290,909 + -0.8
290,930 + -0.1
290,941 + +1.1
291,056 + +2.2
291,056 - -1.2
291,219 - -0.1
291,225 - +4.3
291,321 - +0.6
291,324 - +1.0
291,325 - +0.2
291,662 + -0.3
291,838 + +0.8
291,975 + -2.6
292,093 + -1.5
292,120 + +0.1

Or see this region's nucleotide sequence