Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6874

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15241 and 15242 are separated by 80 nucleotides15242 and 15243 are separated by 271 nucleotides mRNA_6873: 15241 - K01409 KAE1, tsaD, QRI7 N6-L-threonylcarbamoyladenine synthase, at 326,924 to 328,423 15241 mRNA_6874: 15242 - BLAST similar to An13g00570 [Aspergillus niger], at 328,504 to 329,604 15242 mRNA_6875: 15243 - K10563 mutM, fpg formamidopyrimidine-DNA glycosylase, at 329,876 to 331,485 15243

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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327,630 - 15241 mRNA_6873 0.47 -0.0
327,670 + 15241 mRNA_6873 0.50 +1.3
327,673 - 15241 mRNA_6873 0.50 +3.6
327,766 - 15241 mRNA_6873 0.56 +1.1
327,827 + 15241 mRNA_6873 0.60 +1.1
328,344 - +0.5
328,494 - +0.3
328,500 - +0.5
328,631 - 15242 mRNA_6874 0.12 -0.5
328,633 + 15242 mRNA_6874 0.12 -0.4
328,638 + 15242 mRNA_6874 0.12 +0.6
328,640 + 15242 mRNA_6874 0.12 -0.1
328,658 + 15242 mRNA_6874 0.14 +1.0
328,802 - 15242 mRNA_6874 0.27 -0.7
328,919 + 15242 mRNA_6874 0.38 -1.5
329,097 + 15242 mRNA_6874 0.54 +0.6
329,233 + 15242 mRNA_6874 0.66 +0.7
329,254 + 15242 mRNA_6874 0.68 +1.5
329,394 + 15242 mRNA_6874 0.81 +0.2
329,398 - 15242 mRNA_6874 0.81 +0.3
329,809 - +0.6
329,825 + +0.6
330,073 + 15243 mRNA_6875 0.12 -0.4
330,251 + 15243 mRNA_6875 0.23 +1.8
330,396 - 15243 mRNA_6875 0.32 +1.6
330,527 - 15243 mRNA_6875 0.40 -2.0

Or see this region's nucleotide sequence