Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6887

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15254 and 15255 are separated by 200 nucleotides15255 and 15256 are separated by 232 nucleotides mRNA_6886: 15254 - K09493 CCT1, TCP1 T-complex protein 1 subunit alpha, at 356,245 to 358,443 15254 mRNA_6887: 15255 - KOG2793 Putative N2,N2-dimethylguanosine tRNA methyltransferase, at 358,644 to 359,526 15255 mRNA_6888: 15256 - K04422 MAP3K13, LZK mitogen-activated protein kinase kinase kinase 13, at 359,759 to 363,523 15256

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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358,619 - +2.4
358,634 + +1.3
358,644 + +2.8
358,644 + +0.5
358,801 - 15255 mRNA_6887 0.18 +0.5
359,074 + 15255 mRNA_6887 0.49 +0.2
359,368 - 15255 mRNA_6887 0.82 +0.1
359,535 - +2.1
359,626 + +1.5
359,643 + +0.1
359,666 + +0.3
359,767 + +1.1
359,771 - -1.1

Or see this region's nucleotide sequence